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Magnussen, T., Johnsen, A., Kjærandsen, J., Struck, T. H. & Søli, G. E. E. (2022). Molecular phylogeny of Allodia (Diptera: Mycetophilidae) constructed using genome skimming. Systematic Entomology 47: 267-281. DOI: 10.1111/syen.12529
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Radashevsky, V.; Pankova, V. V.; Malyar, V.; Cerca, J.; Struck, T. H. (2021). A review of the worldwide distribution of Marenzelleria viridis, with new records for M. viridis, M. neglecta and Marenzelleria sp. (Annelida: Spionidae). Zootaxa 5081: 353-372. DOI: 10.11646/zootaxa.5081.3.3
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Pazoki, S., Rahimian, H. & Struck, T. H. (2021). Genetic diversity and population structure of three Hydroides species (Sedentaria, Serpulidae) in the Persian Gulf and Gulf of Oman, with the possible indication of heteroplasmy. Systematics and Biodiversity 19: 993-1011. DOI: 10.1080/14772000.2021.1965668
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Meca, M. A., Zhadan, A. & Struck, T. H. (2021). The Early Branching Group of Orbiniida Sensu Struck et al., 2015: Parergodrilidae and Orbiniidae. Diversity 13: 29. DOI: 10.3390/d13010029
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Cerca, J., Maurstad, M. F., Rochette, N. C., Rivera‐Colón, A. G., Rayamajhi, N., Catchen, J. M. & Struck, T. H. (2021). Removing the bad apples: A simple bioinformatic method to improve loci‐recovery in de novo RADseq data for non‐model organisms. Methods in Ecology & Evolution 12: 805-817. DOI: 10.1111/2041-210X.13562
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Cerca, J., Rivera-Colón, A. G., Ferreira, M. S., Ravinet, M. Nowak, M. D., Catchen, J. M. & Struck, T. H. (2021). Incomplete lineage sorting and ancient admixture, and speciation without morphological change in ghost-worm cryptic species. PeerJ 9: e10896. DOI: 10.7717/peerj.10896
- Elgetany, A. H., van Rensburg, H., Hektoen, M., Matthee, C., Budaeva, N., Simon, C. A. & Struck, T. H. (2020). Species delineation in the speciation grey zone - the case of Diopatra (Annelida, Onuphidae). Zoologica Scripta 49: 516-534. DOI: 10.1111/zsc.12421
- Pazoki, S., Rahimian, H., Struck, T. H., Katouzian, A. R. & Kupriyanova, E. K. (2020). A new species of the Spirobranchus kraussii-complex (Annelida, Serpulidae) from the Persian Gulf and Gulf of Oman. ZooTaxa 4748: 401-430. DOI: 10.11646/zootaxa.4748.3.1
- Cerca, J., Meyer, C., Stateczny, D., Siemon, D., Wegbrod, J., Purschke, G., Dimitrov, D. & Struck, T. H. (2020). Deceleration of morphological evolution in a cryptic species complex and its link to paleontological stasis. Evolution 74: 116-131. DOI:10.1111/evo.13884
- Cerca, J., Meyer, C., Purschke, G. & Struck, T. H. (2020). Delimitation of cryptic species drastically reduces the geographical ranges of marine interstitial ghost-worms (Stygocapitella; Annelida, Sedentaria). Molecular Phylogenetics and Evolution 143: 106663. DOI: 10.1016/j.ympev.2019.106663
- Cerca, J., Purschke, G. & Struck, T. H. (2018). Marine connectivity dynamics: Clarifying cosmopolitan distributions of marine interstitial invertebrates and the meiofauna paradox. Marine Biology 165: 123. DOI: 10.1007/s00227-018-3383-2
- Helm, C., Beckers, P., Bartolomaeus, T., Drukewitz, S.H., Kourtesis, I., Weigert, A., Purschke, G., Worsaae, K., Struck, T. H. & Bleidorn, C. (2018). Convergent evolution of the ladder-like ventral nerve cord in Annelida. Frontiers in Zoology 15: 36. DOI: 10.1186/s12983-018-0280-y
- Ramey-Balci, P., Fiege, D. & Struck, T. H. (2018). Molecular phylogeny, morphology, and distribution of six species of Polygordius (Polychaeta: Polygordiidae) in the Atlantic and Mediterranean. Molecular Phylogenetics and Evolution 127: 919-930. DOI: 10.1016/j.ympev.2018.06.039
- Struck, T. H., Feder, J. L., Bendiksby, M., Birkeland, S., Cerca, J., Gusarov, V. I., Kistenich, S., Larsson, K.-H., Liow, L. H., Nowak, M. D., Stedje, B., Bachmann, L. & Dimitrov, D. (2018) Finding Evolutionary Processes Hidden in Cryptic Species. Trends in Ecology & Evolution 33: 153-163. DOI: 10.1016/j.tree.2017.11.007
- Elgetany, A. H., El-Ghobashy, A. E., Ghoneim, A. M. & Struck, T. H. (2018) Description of a new species of the genus Marphysa (Eunicidae), Marphysa aegypti sp.n., based on molecular and morphological evidence. Invertebrate Zoology 15:71–84. DOI: 10.15298/invertzool.15.1.05
- Struck, T. H., Koczula, J., Stateczny, D., Meyer, C. & Purschke, G. (2017). Two new species in the annelid genus Stygocapitella (Orbiniida, Parergodrilidae) with comments on their biogeography. ZooTaxa 4286: 301–332. DOI: 10.11646/zootaxa.4286.3.1
- Kocot, K. M., Struck. T. H., Merkel, J., Waits, D. S., Todt, C., Brannock, P. M., Weese, D. A., Cannon, J. T., Moroz, L. L., Lieb, B. & Halanych, K. M. (2017). Phylogenomics of Lophotrochozoa with Consideration of Systematic Error. Systematic Biology 66: 256–282. DOI: 10.1093/sysbio/syw079
- Aguado, M. T., Richter, S., Sontowski, R., Golombek, A., Struck, T. H. & Bleidorn, C. (2016). Syllidae mitochondrial gene order is unusually variable for Annelida. Gene 594: 89-96. DOI: 10.1016/j.gene.2016.08.050
- Sielaff, M., Schmidt, H., Struck, T. H., Rosenkranz, D., Mark Welch, D. B., Hankeln, T. & Herlyn, H. (2016). Phylogeny of Syndermata (syn. Rotifera): Mitochondrial gene order verifies epizoic Seisonidea as sister to endoparasitic Acanthocephala within monophyletic Hemirotifera. Molecular Phylogenetics and Evolution 96: 79–92. DOI: 10.1016/j.ympev.2015.11.017
- Weigert, A., Golombek, A., Gerth, M., Schwarz, F., Struck, T. H. & Bleidorn, C. (2016). Evolution of mitochondrial gene order in Annelida. Molecular Phylogenetics and Evolution 94: 196–206. DOI: 10.1016/j.ympev.2015.08.008
- Struck, T. H., Golombek, A., Weigert, A., Franke, F. A., Westheide, W., Purschke, G., Bleidorn, C. & Halanych, K. M. (2015). The evolution of annelids reveals two adaptive routes to the interstitial realm. Current Biology 25: 1993–1999. DOI:10.1016/j.cub.2015.06.007
- Golombek, A., Tobergte, S. & Struck, T. H. (2015). Elucidating the phylogenetic position of Gnathostomulida and first mitochondrial genomes of Gnathostomulida, Gastrotricha and Polycladida (Platyhelminthes). Molecular Phylogenetics and Evolution 86: 49–63. DOI: 10.1016/j.ympev.2015.02.013
- Struck, T. H., Haug, C., Haszprunar, G., Prpic, N. & Haug, J. T. (2015). Enalikter aphson is more likely an annelid than an arthropod: A comment to Siveter et al. (2014). Proceedings of the Royal Society B: Biological sciences 282: 2014094. DOI: 10.1098/rspb.2014.0946
- Purschke, G., Bleidorn, C. & Struck, T. H. (2014). Systematics, evolution and phylogeny of Annelida – a morphological perspective. Memoirs of Museum Victoria 71: 247–269. DOI: 10.24199/j.mmv.2014.71.19
- Struck, T. H., Wey-Fabrizius, A. R., Golombek, A., Hering, L., Weigert, A., Bleidorn, C., Klebow, S., Iakovenko, N., Hausdorf, B., Petersen, M., Kück, P., Herlyn, H. & Hankeln, T. (2014). Platyzoan paraphyly based on phylogenomic data supports a non-coelomate ancestry of Spiralia. Molecular Biology and Evolution 31: 1833–1849. DOI: 10.1093/molbev/msu143
- Weigert, A., Helm, C., Meyer, M., Nickel, B., Arendt, D., Hausdorf, B., Santos, S. R., Halanych, K. M., Purschke, G., Bleidorn, C. & Struck, T. H. (2014). Illuminating the base of the annelid tree using transcriptomics. Molecular Biology and Evolution 31: 1391–1401. DOI: 10.1093/molbev/msu080
- Struck, T. H. (2014). TreSpEx – Detection of misleading signal in phylogenetic reconstructions based on tree information. Evolutionary Bioinformatics 10: 51-67. DOI: 10.4137/EBO.S14239
- Kück, P. & Struck, T. H. (2014). BaCoCa – a heuristic software tool for the parallel assessment of sequence biases in hundreds of gene and taxon partitions. Molecular Phylogenetics and Evolution 70: 94–98. DOI: 10.1016/j.ympev.2013.09.011
- Nesnidal, M. P., Helmkampf, M., Meyer, A., Witek, A., Bruchhaus, I., Ebersberger, I., Hankeln, T., Lieb, B., Struck, T. H. & Hausdorf, B. (2013). New phylogenomic data support the monophyly of Lophophorata and an Ectoproct-Phoronid clade and indicate that Polyzoa and Brachiozoa are caused by systematic bias. BMC Evolutionary Biology 13: 253. DOI: 10.1186/1471-2148-13-253
- Bernt, M., Bleidorn, C., Braband, A., Dambach, J., Donath, A., Fritzsch, G., Golombek, A., Hadrys, H., Jühling, F., Meusemann, K., Middendorf, M., Misof, B., Perseke, M., Podsiadlowski, L., von Reumont, B., Schierwater, B., Schlegel, M., Schrödl, M., Simon, S., Stadler, P. F., Stöger, I. & Struck, T. H. (2013). A comprehensive analysis of metazoan mitochondrial genomes and animal phylogeny. Molecular Phylogenetics and Evolution 69: 352-364. DOI: 10.1016/j.ympev.2013.05.002
- Golombek, A., Tobergte, S., Nesnidal, M. P., Purschke, G. & Struck, T. H. (2013). Mitochondrial genomes to the rescue – Diurodrilidae in the myzostomid trap. Molecular Phylogenetics and Evolution 68: 312–326. DOI: 10.1016/j.ympev.2013.03.026
- Struck, T. H. (2013). The impact of paralogy on phylogenomic studies – a case study on annelid relationships. PLoS ONE 8: e62892. DOI: 10.1371/journal.pone.0062892
- Perseke, M., Golombek, A., Schlegel, M. & Struck, T. H. (2013). The Impact of Mitochondrial Genome Analyses on the Understanding of Deuterostome Phylogeny. Molecular Phylogenetics and Evolution 66: 898-905. DOI: 10.1016/j.ympev.2012.11.019
- Thornhill, D. J., Struck, T. H., Ebbe, B., Lee, R. W., Mendoza, G. F., Levin, L. A. & Halanych, K. M. (2012). Adaptive Radiation in Extremophilic Dorvilleids: Diversification of a Single Colonizer or Multiple Independent Lineages? Ecology & Evolution 2: 1958–1970. DOI: 10.1002/ece3.314
- Hartmann, S., Helm, C., Struck, T. H., Tiedemann, R., Selbig, J. & Bleidorn, C. (2012). Phylogenomic analysis of the adult myzostomid Solexa-based transcriptome. PLoS ONE 7: e29843. DOI: 10.1371/journal.pone.0029843
- Zhong, M., Hansen, B., Nesnidal, M., Golombek, A., Halanych, K. M. & Struck, T. H. (2011). Detecting the symplesiomorphy trap: A multigene phylogenetic analysis for terebelliform annelids. BMC Evolutionary Biology 11: 369. DOI: 10.1186/1471-2148-11-369
- Struck, T.H. (2011). Direction of evolution within Annelida and the definition of Pleistoannelida. Journal of Zoological Systematics and Evolutionary Research 49: 340-345. DOI: 10.1111/j.1439-0469.2011.00640.x
- Struck, T. H., Paul, C., Hill, N., Hösel, C., Kube, M., Lieb, B., Meyer, A., Tiedemann, R., Purschke, G. & Bleidorn, C. (2011). Phylogenomic analyses unravel annelid evolution. Nature 471: 95-98. DOI: 10.1038/nature09864
- Dordel, J., Fisse, F., Purschke, G. & Struck, T. H. (2010). Phylogenetic position of Sipuncula derived from multi-gene and phylogenomic data and its implication for the evolution of segmentation. Journal of Zoological Systematics and Evolutionary Research 48: 197-207. DOI: 10.1111/j.1439-0469.2010.00567.x
- Struck, T. H. & Halanych, K. M. (2010). Origins of holopelagic Typhloscolecidae and Lopadorhynchidae within Phyllodocidae (Phyllodocida, Annelida). Zoologica Scripta 39: 269–275. DOI: 10.1111/j.1463-6409.2010.00418.x
- Zanol, J., Halanych, K. H., Struck, T. H. & Fauchald, K. (2010). Phylogeny of the bristle worm family Eunicidae (Eunicida, Annelida) and the phylogenetic utility of noncongruent 16S, COI and 18S in combined analyses. Molecular Phylogenetics and Evolution 55: 660-676. DOI: 10.1016/j.ympev.2009.12.024
- Podsiadlowski, L., Braband, A., Struck, T. H., v. Döhren, J. & Bartolomaeus T. (2009). The mitochondrial genome of Lineus viridis and mitochondrial gene order variation in Lophotrochozoa. BMC Genomics 10: 364. DOI: 10.1186/1471-2164-10-364
- Struck, T. H., Nesnidal, M. P., Purschke, G. & Halanych, K. M. (2008). Detecting Possibly Saturated Positions in 18S and 28S Sequences and their Influence on Phylogenetic Reconstruction of Annelida (Lophotrochozoa). Molecular Phylogenetics and Evolution 48: 628–645. DOI: 10.1016/j.ympev.2008.05.015
- Zhong, M., Struck, T. H. & Halanych, K. M. (2008). Phylogenetic information from three mitochondrial genomes of Terebelliformia (Annelida) worms and duplication of the methionine tRNA. Gene 416: 11–21. DOI: 10.1016/j.gene.2008.02.020
- Struck, T. H. & Fisse, F. (2008). Phylogenetic position of Nemertea derived from phylogenomic data. Molecular Biology and Evolution 25: 728–736. DOI: 10.1093/molbev/msn019
- Hausdorf, B., Helmkampf, M., Meyer, A., Witek, A., Herlyn, H., Bruchhaus, I., Hankeln, T., Struck, T. H. & Lieb, B. (2007). Spiralian phylogenomics supports the resurrection of Bryozoa including Ectoprocta and Entoprocta. Molecular Biology and Evolution 24: 2723-2729. DOI: 10.1093/molbev/msm214
- Halanych, K. M., Cox, L. N. & Struck, T. H. (2007). A brief review of holopelagic annelids. Integrative and Comparative Biology 47: 872-879.
- Struck, T. H. (2007). Data congruence, paedomorphosis and salamanders. Frontiers in Zoology 4: 22. DOI: 10.1186/1742-9994-4-22
- Struck, T. H., Schult, N., Kusen, T., Hickman, E., Bleidorn, C., McHugh, D. & Halanych, K. M. (2007). Annelida phylogeny and the status of Sipuncula and Echiura. BMC Evolutionary Biology 7: 57. DOI: 10.1186/1471-2148-7-57
- Struck, T. H. (2006). Progenetic species in polychaetes (Annelida) and problems assessing their phylogenetic affiliation. Integrative and Comparative Biology 46: 558-568. DOI: 10.1093/icb/icm086
- Struck, T. H., Purschke, G. & Halanych, K. M. (2006). Phylogeny of Eunicida (Annelida) and Exploring Data Congruence using a Partition Addition Bootstrap Alteration (PABA) approach. Systematic Biology 55: 1-20. DOI: 10.1080/10635150500354910
- Struck, T. H., Purschke, G. & Halanych, K. M. (2005). A scaleless scale worm: Molecular evidence for the phylogenetic placement of Pisione remota (Pisionidae, Annelida). Marine Biology Research 1: 243-253. DOI: 10.1080/17451000500261951
- Struck, T. H. & Purschke, G. (2005). The sister group relationship of Aeolosomatidae and Potamodrilidae (Annelida: “Polychaeta”) – a molecular phylogenetic approach based on 18S rDNA and cytochrome oxidase I. Zoologischer Anzeiger 243: 281-293. DOI: 10.1016/j.jcz.2005.01.001
- Burnette, A. B., Struck, T. H. & Halanych, K. M. (2005). Holopelagic Poeobius meseres (“Poeobiidae,” Annelida) Is Derived From Benthic Flabelligerid Worms. Biological Bulletin 208: 213-220. DOI: 10.2307/3593153
- Struck, T. H., Halanych, K. M. & Purschke, G. (2005). Dinophilidae (Annelida) is most likely not a progenetic Eunicida: Evidence from 18S and 28S rDNA. Molecular Phylogenetics and Evolution 37: 619-623. DOI: 10.1016/j.ympev.2005.07.010
- Jördens, J., Struck, T. & Purschke, G. (2004). Phylogenetic inference regarding Parergodrilidae and Hrabeiella periglandulata (‘Polychaeta’, Annelida) based on 18S rDNA, 28S rDNA and COI sequences. Journal of Zoological Systematics and Evolutionary Research 42: 270-280. DOI: 10.1111/j.1439-0469.2004.00265.x
- Struck, T., Hessling, R. & Purschke, G. (2002). The phylogenetic position of the Aeolosomatidae and Parergodrilidae, two enigmatic oligochaete-like taxa of the ‘Polychaeta’, based on molecular data from 18S rDNA sequences. Journal of Zoological Systematics and Evolutionary Research 40: 155-163. DOI: 10.1046/j.1439-0469.2002.00200.x
- Struck, T. H., Westheide, W. & Purschke, G. (2002). Progenesis in Eunicida (“Polychaeta,” Annelida) - separate evolutionary events? Evidence from molecular data. Molecular Phylogenetics and Evolution 25: 190-199. DOI: 10.1016/S1055-7903(02)00231-2